Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  266 bits (681), Expect = 2e-75
 Identities = 159/398 (39%), Positives = 243/398 (61%), Gaps = 8/398 (2%)

Query: 184 DKHGVNLTPITRPINFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVT 243
           D  G   T   RPI   G  W L   +    I A  D +    TL+LL    VI++  + 
Sbjct: 272 DNKGEASTFFMRPIE--GSPWFLATALPTRLITAQRDDV--LSTLSLLQIPMVILLV-LM 326

Query: 244 MLHVSFKPLSRLNTLVAN---LSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFI 300
            L+   +  +R+  L  N   LS G+ DLT+R+ + ++DE+G I +S+N FI  LQ M  
Sbjct: 327 QLYAIRQLTNRMKVLKGNIDALSTGDADLTRRITIRAEDELGAIGHSVNRFIAYLQDMIG 386

Query: 301 DVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAAL 360
           +V  ++  +  ++  L   +      L +H  ET+Q +TAI +MS++A S+AQ+A + A 
Sbjct: 387 EVTQATGAMASSLGDLQRTSAHTSEILMRHASETDQTVTAITQMSSTAESVAQNAAETAA 446

Query: 361 LTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQ 420
            T+R N +AD S+  V EA NSV  L+++V+S    +  M +D ++I  +L VIGAIA Q
Sbjct: 447 FTQRANEHADRSRVVVGEASNSVVALIDEVASATRKVESMQQDAQRITEILGVIGAIAGQ 506

Query: 421 TNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKE 480
           TNLLALNAAIEAARAGEQGRGFAVVADEVRALA+RTQ STS+IN+ML  L     + V  
Sbjct: 507 TNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTSEINEMLTRLTQGVSSSVSA 566

Query: 481 MDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAI 540
           M++T+  C+  A+ T+ V   L+ +  SV+++N+L+T IAT+A +Q  VT E++++M  I
Sbjct: 567 MENTQASCQSAADATSRVNSGLDEMAGSVSQINSLSTQIATAAEQQSAVTEEINRSMVQI 626

Query: 541 QEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRVQ 578
           + MV +L  +     + + +L + +  ++ ++GRF+V+
Sbjct: 627 RHMVEELVESGLASETNTRQLLDANTRVNAIMGRFKVR 664



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 13 LIIAIISLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENELNSKLALAQSL 70
          L+I ++ L+++T    ++Y ++  ++Q + Q   + I  +  +++ ELN   A  +S+
Sbjct: 15 LVIFMLVLSLLT-VVGISYLVAPKLRQTEEQVALNRIAEVAEQIQGELNKVQAQQRSI 71