Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  202 bits (515), Expect = 3e-56
 Identities = 111/350 (31%), Positives = 192/350 (54%)

Query: 228 LALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNS 287
           +A L    VI++    ++ V  +PL+ +   +AN+++G GDLT+RLAV+SKDE G++ ++
Sbjct: 280 VAALTAVGVILLLLGMLMRVLMRPLTDMGRAMANIAEGEGDLTRRLAVQSKDEFGELASA 339

Query: 288 INLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSAS 347
            N F+E++     +V+ ++++++     +   + S++   ++    T     AI E+ A+
Sbjct: 340 FNRFVERIHTSIREVSSATQQVNEVAARVLAASNSSMANSDEQASRTNSVAAAINELGAA 399

Query: 348 AGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQI 407
           A  IA++A DA+         A++ +Q V + + ++  L  ++S+    I  ++  T  I
Sbjct: 400 AQEIARNAADASQQASGARHQAEDGRQVVEQNIAAMRELSAKISASCAQIEALNAKTVDI 459

Query: 408 NSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDML 467
             +L+VI  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S  +I  M+
Sbjct: 460 GQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQSSAQEIQQMI 519

Query: 468 ATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQR 527
             L+      V+ M  ++   E +    +   + L  VT  + E++ +N  +AT+  EQ 
Sbjct: 520 EQLQVGAGASVQTMTESQRQSESSVSIADRAGERLGEVTQRIGEIDGMNQSVATATEEQT 579

Query: 528 QVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
            V   ++ ++  I  + ++   N         +L   +  L  +V  FR+
Sbjct: 580 AVIESLNMDITEINTLNQQGVENLQSTLRACGDLDQQARRLKQLVDSFRI 629



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 43  QNITHNIDLMQRKLENELNSKLALAQSLNFSMMDIGETKASSGFNKIIKIVNGYAFDDTG 102
           Q +  NI  M R+L  ++++  A  ++LN   +DIG+         I++++ G + + T 
Sbjct: 426 QVVEQNIAAM-RELSAKISASCAQIEALNAKTVDIGQ---------ILEVIKGIS-EQTN 474

Query: 103 NMSEEDAQQYVSLAENHGDAVVVSPVTFNEGQPTITFSVKRFDESVDFFVFNLSAFSQMM 162
            ++   A +     E      VV+    N    T + S +   + ++       A  Q M
Sbjct: 475 LLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQS-SAQEIQQMIEQLQVGAGASVQTM 533

Query: 163 TDYATEGSFAELMANGNVIFSDKHGVNLTPITRPI 197
           T+       ++  +  +V  +D+ G  L  +T+ I
Sbjct: 534 TE-------SQRQSESSVSIADRAGERLGEVTQRI 561