Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (536), Expect = 1e-58
 Identities = 159/542 (29%), Positives = 268/542 (49%), Gaps = 39/542 (7%)

Query: 67  AQSLNFSMMDIGETKASSGFNKIIKIVNGYAFDDTGNMSEEDA-------QQYVSLAENH 119
           A  L    + I  T++S+ F  +IK + G+++    ++ + +         Q+V + E  
Sbjct: 119 ALRLKIDTLGINNTESSTRFTDVIKTLVGFSYSLEASIEDPEILRGLSSLNQFVDMKERA 178

Query: 120 GDAVVVSPVTFNEGQPTITFSVKRFDESVDFFVFNLSAFSQMMTDYATEGSFAELMANGN 179
           G   V+    FN+ +      + RF  ++  F   L AF +   +         +   G+
Sbjct: 179 GRERVLLVQAFNQNRFDAPL-LSRFSRNLGEFSGYLEAFQRWSPEVFKTKLNDVMQQPGS 237

Query: 180 VIFSDKHGVNL-TPITRPINFAGQDWQLIGY--IDLTA-IQANTDQ-------------- 221
           +  +    +   TP+  P+N   +DW  +    ID+ A ++A   Q              
Sbjct: 238 LEVARLQRLGFDTPMGDPLNVKPEDWFNLSTARIDMMANVEAELGQNVVGLATDARSSAQ 297

Query: 222 --LNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKD 279
             L   + + +L+   V+ +ASV + ++    +    TL+A  ++   DLT R     KD
Sbjct: 298 SSLYVAVAIVVLMLIVVLWLASVIIRNIKVAVVDVNRTLMALSTR---DLTARTRYIGKD 354

Query: 280 EIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAIT 339
           E G+I  +++    ++ ++  ++  ++ ++  A    S  A      + Q  Q T+Q  T
Sbjct: 355 EFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVAT 414

Query: 340 AIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITR 399
           AI EMSA+   +A+S  DAA +++R N    + K   TE  N++ GL+ ++S  AE  +R
Sbjct: 415 AISEMSATVKDVARSTTDAAEMSQRVNSSTVQGK---TEIDNTI-GLIQELSVQAEETSR 470

Query: 400 MSEDTK----QINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASR 455
           + ++ K     I+SVL VI  +A+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +
Sbjct: 471 IIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKK 530

Query: 456 TQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNL 515
           TQ ST  I  M+A L++ +E     M  T    +E A       + L  + + +A +++ 
Sbjct: 531 TQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDR 590

Query: 516 NTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRF 575
           N  +A++A EQ  V  E+ +N+  I  +V +++  A Q    S EL   +     +VGRF
Sbjct: 591 NIQVASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRF 650

Query: 576 RV 577
           +V
Sbjct: 651 KV 652