Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  212 bits (540), Expect = 3e-59
 Identities = 120/373 (32%), Positives = 204/373 (54%)

Query: 204 WQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLS 263
           W  IG I    + A+  +L W I +   V A V  +   +   V  +P+  +++ +  ++
Sbjct: 273 WNFIGLIKQDEVMASATRLTWLIGIIAAVLAVVFAIVGASFARVIVRPIHSVSSGLEGIA 332

Query: 264 QGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSN 323
            G GDLTQ LAV  KDE  Q+    N F+  ++ +   +  ++ +I  A    +  +   
Sbjct: 333 GGEGDLTQNLAVRGKDETAQLAGWFNKFLTAIRSLIQHIGQAAGKILEASHSSTRVSNDM 392

Query: 324 LNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSV 383
                +  +  +   TA  EM A++  +A+S   AA   +   + A E ++ + +AV SV
Sbjct: 393 AEAAGRQREAVDMVSTAFHEMVATSNEVARSCSQAADSADNGQQQAREGQRQIDDAVRSV 452

Query: 384 NGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFA 443
           + L  +++  A+ +T++ +D+  I S+L  I +IAEQTNLLALNAAIEAARAGEQGRGFA
Sbjct: 453 DQLSEELTRSAKDMTQLEKDSAGIQSILNTIRSIAEQTNLLALNAAIEAARAGEQGRGFA 512

Query: 444 VVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLN 503
           VVADEVRALA RT  ST++I+ +L  L   T +V ++M ++    +++  +      S  
Sbjct: 513 VVADEVRALAKRTSDSTAEIDSLLGNLAKRTASVAQQMHASLDVSQQSVTKIGQARSSFG 572

Query: 504 VVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQN 563
            + +SV  + ++NT IAT+A EQ QV  +++++++ I    + +   +    + S  L+ 
Sbjct: 573 QIRESVDVIRDMNTQIATAAEEQHQVAEDINRHISQIHGDAQLIAQLSDSARADSRSLEM 632

Query: 564 TSHALSDVVGRFR 576
            S  L  +V +F+
Sbjct: 633 LSSELDGLVRKFK 645