Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  283 bits (723), Expect = 2e-80
 Identities = 198/590 (33%), Positives = 311/590 (52%), Gaps = 49/590 (8%)

Query: 1   MAQLSFKNKIIALIIAIISLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENEL 60
           M+  S +NK+  L++A++ L +I +       +  Y  Q +SQ +  ++ L + KL NE 
Sbjct: 5   MSNYSLRNKL--LLLAMVPLVLILTA------VMSYSWQVESQALDDSVALFKEKLVNER 56

Query: 61  NSKLALAQSLNFSMMDIGETKASSGFNKIIKIVNGYAFDDTGNMSEEDAQQYVSLAENHG 120
             +L  A  +  +++D   +   +G   I   +    F   G         Y  + +  G
Sbjct: 57  QQQLQEATQIALAVVDHQISLGQNG--NINDALRPLRFGSAG---------YFFIYDYQG 105

Query: 121 DAVVVSPVTFNEGQPTITFSVKRFDESVDFFVFNLSAFSQMMTDYATEGSFAELMANGNV 180
             V  +     EG P I  +  +  + V   +           D A  G         N 
Sbjct: 106 ANVFHATNPALEGTPQIGMTDPQGTKIVVGLI-----------DAAKRGG-----GFFNY 149

Query: 181 IFSDKHGVN--LTPITRPINFAGQDWQLIGYIDLTAIQANTD-------QLNWKITLAL- 230
           ++  K GV   +  I       G+DW L     L  I A  D       Q  W+  +A+ 
Sbjct: 150 VYP-KPGVEGLVDKIGYAAPIPGKDWLLGTGAYLDDIDAAVDTYSQSARQAMWEKAVAIF 208

Query: 231 ---LVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNS 287
              LV A + ++A  +  H   KP+  +   + ++++G GDLT RL+V  +DEI ++  +
Sbjct: 209 MMSLVLAFITLIAIWSAAHRMVKPIRAMVDSLNDIAKGEGDLTARLSVRGEDEIAELGIA 268

Query: 288 INLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSAS 347
            N F++KLQ +  DVAD++  + +A V +  Q     N LN H  ET+Q +TAI EMS++
Sbjct: 269 FNQFVDKLQGIIRDVADTTGRVKQAAVDIDRQTSEMANQLNSHNNETDQVVTAITEMSST 328

Query: 348 AGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQI 407
           A  +AQ+    A  T+       +++  V  ++  ++ L++QV+  A  I  +SE +++I
Sbjct: 329 AAEVAQNTTQVAEATQAATGDVAKAQACVDTSLAEISNLMSQVNDAAANIQSLSEQSQKI 388

Query: 408 NSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDML 467
           NSVL VIG IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRTQ ST +IN+ML
Sbjct: 389 NSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEINEML 448

Query: 468 ATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQR 527
             L     + VK MD ++  C+ + E +  + +SL  VT +V  +N+++T IA +A EQ 
Sbjct: 449 TDLHRLVSSAVKTMDESQHSCQRSVEASTAISESLGSVTSAVTAINDMSTQIAAAATEQS 508

Query: 528 QVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
            VT E+++N+ AIQE+V  L +++ +  +VS  +      LS++VG+F+V
Sbjct: 509 SVTEEINRNVYAIQEIVNALLVSSQEARTVSRTVSTEGAQLSNLVGQFKV 558