Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  193 bits (491), Expect = 2e-53
 Identities = 121/383 (31%), Positives = 200/383 (52%), Gaps = 6/383 (1%)

Query: 198 NFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNT 257
           ++  Q W L   +    I+A      W    A L+   +I++  VT+  +      +L +
Sbjct: 286 DYPKQKWHLAFMLPHEVIEAPVRDAFWN---ACLMSLGIILLVGVTVWLLLLPLRRQLES 342

Query: 258 LVA---NLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVV 314
           L+    N++ G GDL++R+ ++ +DE+G + ++ N F  K+QQM     D ++++D  +V
Sbjct: 343 LLGAMDNMASGEGDLSRRIDIQREDELGLMADAFNRFAAKVQQMLRQTRDLTRDVDDGIV 402

Query: 315 HLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQ 374
                    +  +++   + +    A  EM+ ++  +A SA   A   E     AD+ KQ
Sbjct: 403 EARKICDVAVGAVSRQKAQIDSVAAAAIEMAHTSQEMAASAQRTADFAETAQTQADDGKQ 462

Query: 375 TVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAAR 434
            V EA + +  L ++V   A  I  +   +++I  VL VI  IAEQTNLLALNAAIEAAR
Sbjct: 463 IVAEATSGIETLSSRVIEAAAVIKELRGSSEKIGEVLSVIRNIAEQTNLLALNAAIEAAR 522

Query: 435 AGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAER 494
           AGEQGRGFAVVADEVR LASRTQ ST+ I  ++  L+ +       M++     +     
Sbjct: 523 AGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQRLQQSAMEAESVMEAGVNDAKRGQLL 582

Query: 495 TNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQV 554
           T+ V DSL  +TD++  +    T I  +  +Q  V  EV++N+  ++ +    +  + ++
Sbjct: 583 TSQVQDSLGKITDAIGAILQQTTEITVAIGQQAVVADEVAQNVENVRGLSDDSHSASQEL 642

Query: 555 TSVSNELQNTSHALSDVVGRFRV 577
                  +  +HALS  + +FRV
Sbjct: 643 AVSLKAFEQLTHALSGNISQFRV 665