Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25-INTG

 Score =  223 bits (568), Expect = 2e-62
 Identities = 159/587 (27%), Positives = 294/587 (50%), Gaps = 41/587 (6%)

Query: 3   QLSFKNKIIAL-IIAIISLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENE-- 59
           +LS K K+++L ++ ++   ++ S  +V      +I Q  ++N    ++  +++L N+  
Sbjct: 2   RLSLKAKVLSLAVVPVLLFAVVISLTTV------WILQGQARN---EVEETRQRLLNDAK 52

Query: 60  --LNSKLALAQSLNFSMMDIGETKASSGFNKIIKIVNGYAFDDTGNMSEEDAQQYVSLAE 117
             L S + +A +    + D      ++   +++K+++   +   G     D++       
Sbjct: 53  ATLQSYVEVAMTTIKPLYDAAAPGDTAARTEVVKLLSNTRYGKDGYFFGYDSETIRLFKG 112

Query: 118 NHGDAVVVSPVTFNEGQPTITFSVKRFDESVD---FFVFNLSAFSQMMTDYATEGSFAEL 174
           N  D V  S   F + +      V R    V          S+     T+   +  + E 
Sbjct: 113 NSPDGVGKS---FKDNRDPNGVYVNRDLVKVGKDGTHYLQYSSTQPGQTELVPKMGYTEY 169

Query: 175 MANGNVIFSDKHGVNLTPITRPINFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCA 234
           +   +++           I   +N  G + Q+        ++A  ++    + L++L  A
Sbjct: 170 LPKWDMV-----------IGTSVNLDGIEAQV------AVVEAKVEKRMEGVLLSILGVA 212

Query: 235 SVIIVA----SVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINL 290
            V+++      + M +   +PL  +   + +++ G GDLT+RLA+ S+DE+G +  + N 
Sbjct: 213 VVVLLVIAAVGMVMANTILRPLHLMKANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNR 272

Query: 291 FIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGS 350
           F++K+  +   + + + ++   V  +S+QA+ +   + +   ET+Q  TAI +MS++A  
Sbjct: 273 FVDKIHGLVRQITEMTTQLTGLVSQVSDQAQRSEQAMERQRHETDQVATAINQMSSAAQE 332

Query: 351 IAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSV 410
           +A+SA  A++  ++T+     +K+ V  ++  ++ LVN + S   ++  + +D   I SV
Sbjct: 333 VARSAQGASVAAQQTDAEGQAAKRVVDGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSV 392

Query: 411 LQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATL 470
           L VI +IAEQTNLLALNAAIEAARAGE GRGFAVVADEVRALASRTQ ST +I  M+  L
Sbjct: 393 LSVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQTSTQEIQGMIDRL 452

Query: 471 KTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVT 530
           +  TE  V  M  +    + T+ + N    SL+ +   +  +N++N  IA++A EQ  V 
Sbjct: 453 QKGTEAAVDAMRRSSDAGDGTSAKANEAGASLDTMAQLIGTINSMNAQIASAAEEQTAVA 512

Query: 531 HEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
            E+++++  I   V  +          S  L +    L  +VG+FR+
Sbjct: 513 EEINRSVHQIAVAVDSVADETQLGAQTSRSLADLGQRLGQLVGQFRI 559