Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  200 bits (508), Expect = 2e-55
 Identities = 121/349 (34%), Positives = 202/349 (57%), Gaps = 10/349 (2%)

Query: 227 TLALLVCASVIIVASVTM---LHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQ 283
           +L L+V   V ++A VT+   +     PL  + + V NL+   GDLTQ++ VES  E+  
Sbjct: 352 SLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIA 411

Query: 284 ICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEE 343
           +   IN FI KL+ +  ++ + +          +  A+   N++N+   + E  +TA+ E
Sbjct: 412 LGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNE 471

Query: 344 MSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSED 403
           MSA+A  +A++++  A  TE         + ++++A+  V  +  +     E + +++E 
Sbjct: 472 MSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAES 531

Query: 404 TKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQI 463
           +  I+ +L+VI AIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAS+TQ ST +I
Sbjct: 532 STNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEI 591

Query: 464 NDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSA 523
             ++  L+    +  + +D      +    +T   + SLN + + + E+++  T IAT+A
Sbjct: 592 GKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAA 651

Query: 524 MEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVV 572
            EQ  VT EVS+N+  I +       +A+++  +++E Q +S +L+ +V
Sbjct: 652 EEQSAVTEEVSRNITGISD-------SASELARLADEAQQSSASLAGLV 693



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 58/335 (17%), Positives = 130/335 (38%), Gaps = 30/335 (8%)

Query: 152 VFNLSAFSQMMTDYATEGSFAELMANGNVI--FSDKHGVNLTPITRPINFAGQDWQLIGY 209
           V NL++    +T   T  S AEL+A G  I  F +K  + +  +    + +  + Q+   
Sbjct: 387 VENLASAEGDLTQQVTVESHAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAA- 445

Query: 210 IDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDL 269
            ++     N+    +    +++   + +   ++ +   S +  S    +  N+  G   L
Sbjct: 446 -EIAQQTHNSVNRQYSDIESVVTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSL 504

Query: 270 TQRL---------AVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQA 320
           +Q +         ++ +K+ +G++  S +  I K+ ++   +A+ +  +           
Sbjct: 505 SQAMGYVTHMSQESLLAKEAVGKVAES-STNISKILEVISAIAEQTNLLA---------- 553

Query: 321 RSNLNTLNQHTQETEQA---ITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVT 377
              LN   +  +  EQ        +E+ A A     S D+   L E   R  + + Q + 
Sbjct: 554 ---LNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLIEALQREVNSASQIID 610

Query: 378 EAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGE 437
           + V+     V Q  S   ++  +    ++++S +  I   AE+ + +    +       +
Sbjct: 611 QGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISD 670

Query: 438 QGRGFAVVADEVRALASRTQQSTSQINDMLATLKT 472
                A +ADE +  ++       Q +  L  LKT
Sbjct: 671 SASELARLADEAQQSSASLAGLVEQQHQQLGKLKT 705