Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  201 bits (512), Expect = 5e-56
 Identities = 123/355 (34%), Positives = 203/355 (57%), Gaps = 11/355 (3%)

Query: 230 LLVCASV----IIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQIC 285
           LL+C +V    I++  V    +S  P++       N+++G GDLT RL    +DE+ Q+ 
Sbjct: 198 LLICIAVWLPVILILGVISRSIS-APMADTIAAFENIARGEGDLTLRLEESGRDELKQVA 256

Query: 286 NSINLFIEKLQQMFIDVADS---SKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIE 342
            S N F+ K+Q +   V+ S   S+E+   +  +S QA  ++ T N    ET+   TAI 
Sbjct: 257 ASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQA--SMVTANMQA-ETQSVATAIN 313

Query: 343 EMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSE 402
           EMS ++  +A +A  AA      +  AD++   V  AV  + GL N++   A+    +  
Sbjct: 314 EMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQI 373

Query: 403 DTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQ 462
            + +I  +L VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LASRTQ+ST +
Sbjct: 374 SSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQE 433

Query: 463 INDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATS 522
           IN ++  ++ + ++V   +   +   E+T   T+ V+++L  +  S+ +++++N  IAT+
Sbjct: 434 INAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATA 493

Query: 523 AMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
             EQ  V  E++ N+  I ++  +    + ++ S S ++++ S  L  ++  F++
Sbjct: 494 TEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548