Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (564), Expect = 5e-62
 Identities = 126/393 (32%), Positives = 225/393 (57%), Gaps = 2/393 (0%)

Query: 184 DKHGVNLTPITRPINFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVT 243
           D +GV+    +R I   G  W LI  +    +    ++ +W++ L  L+ A++I+  S  
Sbjct: 249 DNNGVDTLVASRYIPSIG--WYLIAEVPQDELFGAINKASWQLALMGLILAAIIMFTSAW 306

Query: 244 MLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVA 303
           +++    P   L  ++ ++ +G GDL+ RL    +DE G +  S N F+  L +    V+
Sbjct: 307 LINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVS 366

Query: 304 DSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTE 363
            ++ ++ +AV  + NQA+   + +N    + EQ  TAI EM  +A  IA SA++AA   +
Sbjct: 367 ATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASSANNAAENAQ 426

Query: 364 RTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNL 423
             ++  ++  Q+V   + SV  +  Q+ + +ET+++++ED   I++VL+VI  ++EQTNL
Sbjct: 427 VADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVIRGVSEQTNL 486

Query: 424 LALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDS 483
           LALNAAIEAARAGEQGRGFAVVADEVR LASR+  ST  I  ++  L+  T  VV  +  
Sbjct: 487 LALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKTTEVVNAIGQ 546

Query: 484 TRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEM 543
           +    +++ +  +   + L+ + +++  M+ ++  IAT+  EQ  V  E++ ++ AI ++
Sbjct: 547 STNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVTAIADI 606

Query: 544 VRKLNMNAAQVTSVSNELQNTSHALSDVVGRFR 576
            R  +    Q +   ++L+  +  L+++V RF+
Sbjct: 607 SRSSSDVVRQTSLDCSDLREMAVQLNELVSRFK 639