Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (562), Expect = 9e-62
 Identities = 120/375 (32%), Positives = 204/375 (54%)

Query: 203 DWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANL 262
           DW L+  +    + A  ++  ++I +  ++ A+  I  S  +     +P++++  ++ ++
Sbjct: 264 DWYLVAQVPRAEVFALLEESAYQILVWTVLIAAAFIGLSTFVSASVSQPIAKVADMLQDI 323

Query: 263 SQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARS 322
            QG GDL QRL VE  DE+ Q+    N FIEK+Q   I+V D+S ++  A   ++NQA+ 
Sbjct: 324 GQGEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQ 383

Query: 323 NLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNS 382
             +       +T   +TAI EM A+   IA +A  AA   +  +  +   +  VT A ++
Sbjct: 384 TQDDSQLQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDT 443

Query: 383 VNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGF 442
           +N L   V  +   I  ++  T  I S+L VI A+++QTNLLALNAAIEAARAGE GRGF
Sbjct: 444 INQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGF 503

Query: 443 AVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSL 502
           AVVA+EVR LASRT  ST ++  M+  L++     V+ M  ++   +E  +  +    +L
Sbjct: 504 AVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTL 563

Query: 503 NVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQ 562
             ++  +  + ++N  +A +  EQ  V  ++++N+  I E+ ++ +  +  V   S  L 
Sbjct: 564 TEISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLN 623

Query: 563 NTSHALSDVVGRFRV 577
             +H L  +V  F+V
Sbjct: 624 QLAHRLDTLVAGFKV 638