Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 7e-64
 Identities = 125/375 (33%), Positives = 206/375 (54%)

Query: 203 DWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANL 262
           DW L+  +    + A      ++I +  L+ A+  I+ ++ +     +P++++  +  ++
Sbjct: 268 DWYLVAQVPEAEVFALLRDAVYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDI 327

Query: 263 SQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARS 322
            +G GDL QRL V  KDEI Q+    N FI K+Q   I+VA +S+++  +   +SNQA+ 
Sbjct: 328 GEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQ 387

Query: 323 NLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNS 382
            L   ++    T   +TAI EM A+   IA +A  AA+  +  +  ++  +  VT A ++
Sbjct: 388 TLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDT 447

Query: 383 VNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGF 442
           +N L + V  + E I  ++  TK I  +L VI AI+EQTNLLALNAAIEAARAGE GRGF
Sbjct: 448 INQLSHDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGF 507

Query: 443 AVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSL 502
           AVVADEVR LASRT  ST+++  M+  L++     V  M  +R    E     +    SL
Sbjct: 508 AVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSL 567

Query: 503 NVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQ 562
             ++  +  ++++N  +A +  EQ  V  ++++N+  I ++ ++    A      S  L 
Sbjct: 568 VGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTASTAQAAAQASLALN 627

Query: 563 NTSHALSDVVGRFRV 577
             +H L  +V +F+V
Sbjct: 628 QLAHRLDTLVAKFKV 642