Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (558), Expect = 3e-61
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 7/379 (1%)

Query: 203 DWQLIGYIDLTAIQANTDQLNW---KITLALLVCASVIIVASVTMLHVSFKPLSRLNTLV 259
           DW LI  ++   I +    L W    + + LLV   +++VA   M    FK L R+   +
Sbjct: 255 DWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIFKM---QFKDLERVALAL 311

Query: 260 ANLSQGNGDLTQRL-AVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSN 318
            ++++G+GDLT R+    S DEIG + +  N F+E+L  M   + + + +++      S 
Sbjct: 312 NDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSA 371

Query: 319 QARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTE 378
            A  N   +     E     TA+ EM+++   IA +A+  A   +     ++  ++ V +
Sbjct: 372 SAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQ 431

Query: 379 AVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQ 438
           +  S+  L N+V +    I+ ++E +++INS+L  I  IAEQTNLLALNAAIEAARAGEQ
Sbjct: 432 SQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQ 491

Query: 439 GRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHV 498
           GRGFAVVADEVR L+ RT  ST +I  M+ TL+ T    VK M  +    E +    N  
Sbjct: 492 GRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSA 551

Query: 499 MDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVS 558
            +SL  ++ ++ E++++ + IAT+A EQ  VT E+++N  +I+E+   L++ A      S
Sbjct: 552 SESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQS 611

Query: 559 NELQNTSHALSDVVGRFRV 577
            EL + + +L   V RF++
Sbjct: 612 QELAHLAASLQQEVSRFKL 630