Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  265 bits (678), Expect = 3e-75
 Identities = 157/392 (40%), Positives = 240/392 (61%), Gaps = 19/392 (4%)

Query: 201 GQDWQLI--GYID-LTAI-----QANTDQLNWKITLALLVC-------ASVIIVASVTML 245
           G DW L    YID + A+     Q  T+Q+  K  + LL+        A VI+VA+    
Sbjct: 167 GTDWMLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAA---- 222

Query: 246 HVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADS 305
           H    P+  +   + ++++G GDLT+RL+V+ +DEI Q+  + NLF++KLQ +  DVA +
Sbjct: 223 HRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASA 282

Query: 306 SKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERT 365
           + ++  A   + +Q +   + L  H  ET+Q +TAI EMS++A  +AQ+    A  T+  
Sbjct: 283 TAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAA 342

Query: 366 NRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLA 425
                 +++ V  ++  +  L+ Q++  A +I  +SE +++INSVL VIG IAEQTNLLA
Sbjct: 343 TGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLA 402

Query: 426 LNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTR 485
           LNAAIEAARAGEQGRGFAVVADEVR+LASRTQ ST +IN+ML+ L       VK MD ++
Sbjct: 403 LNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQ 462

Query: 486 IHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVR 545
             C  + E +  + +SL  VT +V  +N+++T IAT+A EQ  VT E+++N+ AIQE+V 
Sbjct: 463 QSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVN 522

Query: 546 KLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
           +L  ++     VS  +      L ++VG+F++
Sbjct: 523 ELLHSSEHAARVSQTVSQEGTNLGNLVGQFKI 554