Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  266 bits (681), Expect = 1e-75
 Identities = 184/588 (31%), Positives = 310/588 (52%), Gaps = 45/588 (7%)

Query: 1   MAQLSFKNKIIALIIAIISLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENEL 60
           M+ LS +NK++ L +  + LT++    +V+Y++       + +++   +   + KL  E 
Sbjct: 1   MSNLSLRNKLLLLSLFPLILTLLV-LMTVSYYV-------EQESLAEEVVTFRTKLVGER 52

Query: 61  NSKLALAQSLNFSMMDIGETKASSGFNKIIKIVNGYAFDDTGNMSEEDAQQYVSLAENHG 120
             ++  A  +   ++    +    G   + + +    F   G         Y  + ++ G
Sbjct: 53  KQQIKEATEIAAGIVQYQLSLKDQG--NVNQALRDIRFGSAG---------YFFIYDSQG 101

Query: 121 DAVVVSPVTFNEGQPTITFSVKRFDESVDFFVFNLSAFSQMMTDYATEGSFAELMANGNV 180
             +  + +   EGQ  I  +  R        V  L A  +       +G+F+      N 
Sbjct: 102 KNIFHALMPNLEGQNKIDMTDPR---GTKIIVGLLDAAKR------GDGNFSYYYQKPNT 152

Query: 181 IFSDKHGVNLTPITRPINFAGQDWQLI--GYID-LTAI-----QANTDQL---NWKITLA 229
                    +  I+  +   G DW L    YID + A+     Q  T+Q+   ++ I L 
Sbjct: 153 ------NEQIEKISYVMMVPGTDWMLGTGAYIDDIEAVVEDYRQTVTEQMADKSFMILLI 206

Query: 230 LLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSIN 289
            LV   +     +   H    P+  +   + ++++G GDLT+RL+V+ +DEI Q+  + N
Sbjct: 207 ALVLTGITAFIIMVAAHRMVVPIKNMADSLNDIAKGEGDLTKRLSVKGEDEIAQLGQAFN 266

Query: 290 LFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAG 349
           LF++KLQ +  DVA+++ ++  A   + +Q +   + L  H  ET+Q +TAI EMS++A 
Sbjct: 267 LFVDKLQTIIGDVANATAKVKSAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTAS 326

Query: 350 SIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINS 409
            +AQ+    A  T+        +++ V  ++  + GL++Q+++ A +I  +SE +++INS
Sbjct: 327 EVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAGLMSQINNAAGSIKSLSEQSQKINS 386

Query: 410 VLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLAT 469
           VL VIG IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRTQ ST +IN+ML+ 
Sbjct: 387 VLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEINEMLSE 446

Query: 470 LKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQV 529
           L       VK MD ++  C  + + +  + +SL  VT +V  +N+++T IAT+A EQ  V
Sbjct: 447 LHKLVSVAVKTMDESQQSCVRSVDSSRAISESLGSVTSAVTAINDMSTQIATAATEQSSV 506

Query: 530 THEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
           T E+++N+ AIQE+V +L  ++     VS  +      L  +VG+F++
Sbjct: 507 TEEINRNVYAIQEIVNELLHSSEDAAKVSQTVSQEGINLGKLVGQFKI 554