Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  192 bits (487), Expect = 5e-53
 Identities = 115/383 (30%), Positives = 206/383 (53%), Gaps = 6/383 (1%)

Query: 198 NFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVT---MLHVSFKPLSR 254
           ++  Q W L   +    I+A   +  W    A  V   ++++  +T   ML    + LS+
Sbjct: 288 DYPKQKWHLAFMLPHEVIEAPVTEAFWN---ACFVALGIMLLVGITVWLMLLPFRRQLSK 344

Query: 255 LNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVV 314
           L   + ++++G+ DL+QR+ +E +DE+G++ ++ N F EK+QQM +   + ++E+   V+
Sbjct: 345 LLDAMEDIAEGDSDLSQRILMEREDELGKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVM 404

Query: 315 HLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQ 374
                    +++++   Q+ +   TA  +M+ ++  +A SA  A    E+    A +  Q
Sbjct: 405 DARQVCDLAVSSVSSQKQQIDSVATAATQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQ 464

Query: 375 TVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAAR 434
            V+ A   +  L  QV   A+ I  +   ++QI  VL VI  IA+QTNLLALNAAIEAAR
Sbjct: 465 IVSRATEGMKALSVQVIEAAKVIKELRSSSEQIGEVLSVIRNIADQTNLLALNAAIEAAR 524

Query: 435 AGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAER 494
           AGEQGRGFAVVADEVR LASRTQ ST+ I  ++ TL+ +     + M+S         + 
Sbjct: 525 AGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQTLQQSALQAEQVMESGVEQARVGQDL 584

Query: 495 TNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQV 554
           T  V  +L+ +  ++  +      I  +  +Q  V  EV++N+ +++ +  +  +++  +
Sbjct: 585 TTQVEQALSDIASAIVSIQQQTVEITVAIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDL 644

Query: 555 TSVSNELQNTSHALSDVVGRFRV 577
           +      +  +H L+  +G+F++
Sbjct: 645 SQSLQGFEQATHELTRNIGQFKI 667