Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (587), Expect = 1e-64
 Identities = 126/375 (33%), Positives = 207/375 (55%)

Query: 203 DWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANL 262
           DW L+  +    + A      ++I +  L+ A+  I+ ++ +     +P++++  +  ++
Sbjct: 264 DWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDI 323

Query: 263 SQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARS 322
            +G GDL QRL V+ +DEI Q+    N FI K+Q   I+VA +S+++  +   +SNQA+ 
Sbjct: 324 GEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQ 383

Query: 323 NLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNS 382
            L   ++    T   +TAI EM A+   IA +A  AA+  +  +  ++  +  VT A ++
Sbjct: 384 TLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDT 443

Query: 383 VNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGF 442
           +N L   V  + E I  ++  TK I  +L VI AI+EQTNLLALNAAIEAARAGE GRGF
Sbjct: 444 INQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGF 503

Query: 443 AVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSL 502
           AVVADEVR LASRT  ST+++  M+  L++     V  M  +R    E     +    SL
Sbjct: 504 AVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEASQSL 563

Query: 503 NVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQ 562
             ++D +  ++++N  +A +  EQ  V  ++++N+  I E+ ++    A      S  L 
Sbjct: 564 VGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALN 623

Query: 563 NTSHALSDVVGRFRV 577
             +H L  +V +F+V
Sbjct: 624 QLAHRLDTLVAKFKV 638