Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Membrane fusion component of tripartite multidrug resistance system from Pseudomonas fluorescens FW300-N2E2

 Score =  270 bits (689), Expect = 7e-77
 Identities = 152/378 (40%), Positives = 225/378 (59%), Gaps = 33/378 (8%)

Query: 28  QSRKKGFLGLAAAIVVAG-GSYALYWHFIGSRYI-STDNAYAAAEIAEVTPAVGGIIAQV 85
           + RK   L L   ++++G G +A  WH +  R+  STD+AY    + E+TP V G +  +
Sbjct: 18  RKRKVMLLTLTLLVILSGLGVWA--WHELYGRWSESTDDAYVNGNVVEITPLVTGTVVSI 75

Query: 86  NVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEAN 145
              D + V++G VLVQ D  DA + L  A+A+LA   R+VR   +N +G+ A V AQEA 
Sbjct: 76  GADDGDLVREGQVLVQFDPNDAEVGLQSAQANLARTVRQVRGLYSNVDGMRAQVNAQEAE 135

Query: 146 EQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAM 205
            Q+              A+ + SRR++L   G++S EEL++A+     AQ  L  A+  +
Sbjct: 136 VQK--------------AQENYSRRKNLAAGGAISKEELSHARDDLTSAQNALANARQQL 181

Query: 206 AQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
                         K  +AL D+T V S+P+V  A A+  QA +   R+ + AP++G VA
Sbjct: 182 --------------KTTSALVDDTVVSSHPDVQSAAAQLRQAFLANARSTLIAPVTGYVA 227

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
           KR VQ+G+RVQ G  LM V+P D +++DANFKE +LRD+++GQPV + ADLYG DV Y G
Sbjct: 228 KRTVQLGQRVQPGTALMAVIPLDQLWIDANFKETQLRDMRIGQPVEIEADLYGSDVKYSG 287

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            +     GTGSAF+++PAQNATGNWIK+VQR+P+RI ++ ++L  +PL++GLS +  +D 
Sbjct: 288 TIDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHINAQELAKHPLRIGLSTLVNVDL 347

Query: 386 AGTTDPQTLVQYRAAKVS 403
              + P  L Q    K S
Sbjct: 348 HDQSGP-VLAQQPPQKAS 364