Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  256 bits (653), Expect = 1e-72
 Identities = 140/373 (37%), Positives = 218/373 (58%), Gaps = 30/373 (8%)

Query: 28  QSRKKGFL--GLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQV 85
           +S K+ F+  GLA  +V+       ++   G     TD+AY    + E+TP V G +  +
Sbjct: 19  KSGKRTFMLIGLAIVVVILALGIWAWYEIYGQWSEETDDAYVNGNVVEITPLVTGTVISI 78

Query: 86  NVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEAN 145
              D + V +G VL++ D +DA ++L  AEA+L    R+VR   +N +G+          
Sbjct: 79  GADDGDLVHEGQVLLKFDPSDAEVSLQSAEANLGKVVRQVRGLYSNVDGM---------- 128

Query: 146 EQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAM 205
               KAQL A +A  + A+ + +RR  L   G++S EEL++A+     AQ+ LN  +   
Sbjct: 129 ----KAQLAAQRAAVQTAQDNYNRRRSLAAGGAISQEELSHARDSLTSAQSALNNIQQ-- 182

Query: 206 AQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
                 +LST      + AL D+T V S+P+V  A A+  QA +   R+ + AP++G VA
Sbjct: 183 ------QLST------SVALVDDTVVSSHPDVKAAAAQLRQAYLTNARSTLVAPVTGYVA 230

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
           KR VQ+G+R+Q G   M V+P D +++DANFKE +L  +++GQPV +++DLYG DV Y G
Sbjct: 231 KRTVQLGQRIQPGTATMAVIPLDQLWIDANFKETQLGKMRIGQPVEISSDLYGSDVKYSG 290

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            +     GTGSAF+++PAQNATGNWIK+VQR+P+R+ ++P++L  YPL++GLS    ++ 
Sbjct: 291 TIDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRVHINPEELAKYPLRIGLSTTVEVNL 350

Query: 386 AGTTDPQTLVQYR 398
              + P    Q R
Sbjct: 351 HDQSGPVLAQQPR 363