Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., multidrug efflux system protein from Sinorhizobium meliloti 1021

 Score =  200 bits (508), Expect = 7e-56
 Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 19/358 (5%)

Query: 28  QSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNV 87
           + R+K    L   ++ A G Y   W   G   +STD+AY   +IA ++P V G +A+V+V
Sbjct: 31  KKRRKILPVLGLVLLGAAGWYGYDWWTNGRFLVSTDDAYIEGDIATISPKVSGYVAKVDV 90

Query: 88  VDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147
           V  ++VK GD LV LDD D R+A  QAEA +A  K  +  + A   G  A +   E    
Sbjct: 91  VANQHVKAGDPLVTLDDGDYRIAAEQAEAQIATQKLALSRFDAQISGAKASLAQSE---- 146

Query: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207
              AQ KA +A    A++   R  +L      +     +A+    QA+ANL  A+A +A 
Sbjct: 147 ---AQKKALEATVRGAELAQKRASELQSKSFGTDASRDSAQVALDQARANLAGAEANIAA 203

Query: 208 AQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKR 267
           A           KAN  + +   +++   +   +   ++A  DL  T+++AP  G++   
Sbjct: 204 A-----------KANITVLEAQQMEAESTIRSLELARDKADRDLGFTILKAPYDGVIGNV 252

Query: 268 QVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVV 327
            VQVG  V  G  L  +VPTD +Y+DANFKE ++  +  G  V +  D Y +D    G V
Sbjct: 253 AVQVGDLVSAGQRLAALVPTDQLYIDANFKETQIAHLVPGSKVEIHVDAY-EDHPIEGTV 311

Query: 328 AGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
           A  S  +GS FS++PA+NATGN+ KV+QR+P+RI L    L    L+ GLS+V  +DT
Sbjct: 312 ASISPASGSVFSLLPAENATGNFTKVIQRVPVRITLPADVLAEGHLRAGLSVVVDVDT 369