Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  196 bits (498), Expect = 9e-55
 Identities = 133/365 (36%), Positives = 210/365 (57%), Gaps = 32/365 (8%)

Query: 29  SRKKGFLGLAAAIVVAGGSYALYWHFIGSRYIS-TDNAYAAAEIAEVTPAVGGIIAQVNV 87
           S+ K  + L   +V+AGG + L WH +  R+I  TDNAY  A+I++++  V G++ Q  V
Sbjct: 2   SKSKALVLLPVLLVLAGGGFYL-WHSL--RFIEHTDNAYVEADISQLSVKVPGLVVQSEV 58

Query: 88  VDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147
            D +YV  G +L +LDD++ R  +LQ+EA LA     V + LA    L A +  Q +   
Sbjct: 59  QDNQYVTAGTLLAKLDDSEFRARVLQSEARLA----SVGAELAT---LEAKLLLQASLIA 111

Query: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207
           + KA ++A +AD  R +  L+R  +L R    S +++      F  A+A L  ++A++A 
Sbjct: 112 QAKAGVQATEADVRRVQQQLTRASELRRRDYSSQDDVDRLTAEFDGAEARLAESRASLA- 170

Query: 208 AQATKLSTIGSQKAN--AALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
           A+  +L  + +Q+    AA  +            A A  E A++ L+ T IRAP +GIV 
Sbjct: 171 AREQELGVLKAQREQLFAARAE------------ANAGLELAQLQLKDTEIRAPFNGIVG 218

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
           KR   VG+ VQ G  L ++VP   +++ ANFKE +++ +  GQPV ++ D + D   +HG
Sbjct: 219 KRGAFVGQYVQPGQALFSLVPDGTVWITANFKETQIQAMVPGQPVAVSLDAFPDH-DFHG 277

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRI--ELDPKDLQAYPLQVGLSMVATI 383
           V+   S  +G+ FS++PA+NATGN+ K+VQR+P+RI  EL P + +  P   GLS V ++
Sbjct: 278 VIDSLSPASGAKFSLLPAENATGNFTKIVQRIPVRIRLELPPGEQKVVP---GLSAVVSV 334

Query: 384 DTAGT 388
           DTA T
Sbjct: 335 DTAAT 339