Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  296 bits (759), Expect = 6e-85
 Identities = 164/365 (44%), Positives = 226/365 (61%), Gaps = 30/365 (8%)

Query: 30  RKKGFLGLAAAI--VVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNV 87
           R++  L  AAA+  +  G +Y +YW       +STDNAY A  I +V+P + G +  V+ 
Sbjct: 16  RRRTLLMSAAALTFIALGAAYGIYWWTTARFDMSTDNAYVAGNIIQVSPQIAGTVTAVHA 75

Query: 88  VDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147
            DT++V+ G +LV +D TDARLAL QAEA LA   R+VR+  + D  L+A V AQE    
Sbjct: 76  DDTDFVEAGQMLVTIDPTDARLALDQAEATLAETVRQVRALFSQDGVLAATVLAQETTLA 135

Query: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207
           R++               D +RR+ L  +G+VS EE+ +A+    QA A+L  A+     
Sbjct: 136 RLRE--------------DFARRQRLANTGAVSAEEVKHARDAVTQASAHLAGARK---- 177

Query: 208 AQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKR 267
                      Q+AN  L D T + S+P V  A A+  +A +   RTV+ AP+SG VA+R
Sbjct: 178 ----------QQEANRVLIDMTGLTSHPRVARAAAQVREAYVAWRRTVVPAPVSGQVARR 227

Query: 268 QVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVV 327
            VQVG+R   G PLM ++P D ++VDANFKE +L  +++GQPV LTAD+YGDD+ Y G V
Sbjct: 228 AVQVGQRTTPGTPLMAIIPLDEVWVDANFKEGQLGAMRLGQPVLLTADIYGDDIVYRGTV 287

Query: 328 AGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAG 387
           AG + GTG+AFS++PAQNATGNWIKVVQR+P+RI LDP+DL   PL+VGLSM A +    
Sbjct: 288 AGLAAGTGAAFSLLPAQNATGNWIKVVQRVPVRIALDPRDLAQRPLRVGLSMEAHVSIRD 347

Query: 388 TTDPQ 392
            + PQ
Sbjct: 348 QSGPQ 352