Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  193 bits (490), Expect = 8e-54
 Identities = 125/354 (35%), Positives = 190/354 (53%), Gaps = 19/354 (5%)

Query: 37  LAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVKQG 96
           L    V A G +   W   G    +TDNAY   +I  + P V G + +V V D E V  G
Sbjct: 35  LVVGAVAAAGVFGWRWWTEGRFLETTDNAYIQGDITAIAPKVSGYVDEVAVGDNEVVSAG 94

Query: 97  DVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLKAA 156
            +LV+LD  D R+ + QA A+       + S +AN       ++ Q+    + +  + AA
Sbjct: 95  QLLVRLDSADYRVQVDQARANAEGKAAELASIIAN-------IDLQQTAIAQARGAMDAA 147

Query: 157 QADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLSTI 216
           QA F+RA  DL+R +DLV  G+ S + L +A+       A L +A AA+  AQ  +L+ +
Sbjct: 148 QARFDRAAKDLARYQDLVGRGATSRQSLDSAREQATSGAAELRSAAAALDGAQK-RLAVL 206

Query: 217 GSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRRVQ 276
            + +  AA           EV  A+A+   A+I+L  T IRAPI+G+V  R V+ G+ V 
Sbjct: 207 SADRDAAAA----------EVRSAQAQRALAEINLANTEIRAPIAGVVGNRGVRAGQYVA 256

Query: 277 VGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGTGS 336
            G  LM +VP + +++ ANFKE +L  +  GQ V +  D Y       G V  F+  +G+
Sbjct: 257 PGSALMAIVPLEGLWIAANFKETQLGAMAPGQTVKVEIDAYSGR-HGQGRVVSFAPASGA 315

Query: 337 AFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGTTD 390
            FS++P +NATGN+ KVVQR+P+RIE+   D  +  ++ GLS+  ++DT G  D
Sbjct: 316 QFSLLPPENATGNFTKVVQRVPVRIEMLADDPLSALMRPGLSVEVSVDTRGGRD 369