Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  276 bits (706), Expect = 7e-79
 Identities = 156/374 (41%), Positives = 222/374 (59%), Gaps = 31/374 (8%)

Query: 12  MNSNNSNTEFDGVRAAQSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEI 71
           M + N  T  D     + R   F  L A   VA G++A   +        TD+AY   ++
Sbjct: 1   MTTTNPTTPADPRAVRRKRLAWFGILLATTAVAAGAWA---YLSNPALRHTDDAYVGGQL 57

Query: 72  AEVTPAVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLAN 131
            ++T  + G + ++   +T++V  GDVLV+LD TDAR+ L  A+A+LA A R VR   A+
Sbjct: 58  VQITSEMSGAVTRILADNTDWVAAGDVLVELDSTDARIELASAKAELAQAVRNVRGLFAS 117

Query: 132 DEGLSAMVEAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGF 191
           D               R  A +    A+F +A+ DL+ ++ L+ SG+VS E L +A    
Sbjct: 118 DA--------------RSDADVHLRLAEFNKAQGDLNVKQTLISSGAVSRESLRHASDAL 163

Query: 192 AQAQANLNAAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDL 251
           + AQA L +A+ A AQA               AL +N+T+ SNP V +A  R   A + +
Sbjct: 164 SAAQAALASAQQARAQA--------------LALVNNSTLASNPPVQVAAERVRAAALAI 209

Query: 252 ERTVIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVT 311
           ERT I AP+SG+VA+R +Q+GRRV  G  +MTVVP D ++VDANFKE++L+ V  GQP  
Sbjct: 210 ERTRITAPVSGMVAQRSIQLGRRVGPGEKMMTVVPLDRLWVDANFKEIQLQGVCAGQPAK 269

Query: 312 LTADLYGDDVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAY 371
           +TAD+YG  +TYHG V G   GTG+AF+++PAQNATGNWIKVVQR P+RI LDP +L  +
Sbjct: 270 VTADIYGRSITYHGTVRGIEAGTGAAFALLPAQNATGNWIKVVQRAPVRISLDPSELIQH 329

Query: 372 PLQVGLSMVATIDT 385
           PL++G+S    +DT
Sbjct: 330 PLRIGMSAEVEVDT 343