Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit from Pseudomonas aeruginosa PA14

 Score =  271 bits (692), Expect = 3e-77
 Identities = 150/367 (40%), Positives = 222/367 (60%), Gaps = 28/367 (7%)

Query: 30  RKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVD 89
           RK+  L L A IV+A  +   +  F G  +  TD+AY    + ++TP + G +  +   D
Sbjct: 15  RKRWLLILLAVIVLATLASVAWEFFYGRWHEDTDDAYINGNVVQITPQIVGTVVSIGADD 74

Query: 90  TEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRV 149
            + V++G  LV+ D +DA +AL +AEA+LA   R+VR   +N +G  A V  +       
Sbjct: 75  GDLVRKGQELVRFDPSDADIALQRAEANLAHTVRQVRGLFSNVDGYRAEVATR------- 127

Query: 150 KAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQ 209
           K  L  A+AD++R       R++L   G++S EEL +A+     A+A+L +++  +    
Sbjct: 128 KVALAKAEADYKR-------RKNLADDGAISQEELAHARDALDSAKASLTSSEQQL---- 176

Query: 210 ATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQV 269
                       N AL D+T + S+P+V  A A+  QA +D  R+ I AP++G VAKR V
Sbjct: 177 ----------NTNRALVDDTQITSHPDVKAAAAQLRQAYLDDARSTIVAPVTGYVAKRSV 226

Query: 270 QVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAG 329
           QVG+RVQ G  LM VVP D I++DANFKE +L+ +++GQPV + +DLYG DV Y G V  
Sbjct: 227 QVGQRVQPGNALMAVVPLDQIWIDANFKETQLKHMRIGQPVEIRSDLYGSDVRYSGTVDS 286

Query: 330 FSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGTT 389
              GTGSAFS++PAQNATGNWIK+VQR+P+RI +DP++LQ +PL++GLSM   +D    +
Sbjct: 287 LGVGTGSAFSLLPAQNATGNWIKIVQRVPVRIHIDPQELQKHPLRIGLSMDVKVDLHDQS 346

Query: 390 DPQTLVQ 396
            P   +Q
Sbjct: 347 GPALALQ 353