Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (463), Expect = 1e-50
 Identities = 124/365 (33%), Positives = 196/365 (53%), Gaps = 26/365 (7%)

Query: 35  LGLAAAIVVAGGSYALYWHFIGSRYI-STDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYV 93
           L L    VV GG Y  +W  +  R+I STDNAY  A+I+ ++  V G +    V D ++V
Sbjct: 10  LPLLLLAVVVGGYY--WWSQV--RFIESTDNAYVEADISNISVKVPGYVVTAKVTDNQHV 65

Query: 94  KQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQL 153
           +QG +L +L+    R  + Q++A L  ++  +++       LSA V  Q+A  ++  A +
Sbjct: 66  EQGQLLAELESNQYRAKVSQSQASLQSSQAELQT-------LSAKVTLQQAIIRQAAAGV 118

Query: 154 KAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKL 213
            +A+A+  RA+  L R   L      S +E+  A   F  A  +L+ AKAA+   QA +L
Sbjct: 119 ASAEAEKIRAEQQLKRTTKLKHRDYSSQDEVDQATAAFDSAVGHLDEAKAALVAKQA-EL 177

Query: 214 STIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGR 273
           + + +Q             S  +V  AKA  E A+I L  T IRAP SG++ KR    G+
Sbjct: 178 AVLNAQLNQ----------SQSQVAQAKAGLELAEIQLADTQIRAPFSGVIGKRGALTGQ 227

Query: 274 RVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGG 333
            VQ G  L ++VP   +++ ANFKE +++ ++ GQ V +  D + D  ++ GV+   +  
Sbjct: 228 YVQPGQSLYSLVPDGAVWITANFKETQIQHMQPGQLVQVHLDAFPDQ-SFTGVIDSLAPA 286

Query: 334 TGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGTTDPQT 393
           +G+ FS++PA+NATGN+ K+VQR+P+RI LD  D     +  GLS V  +DT G      
Sbjct: 287 SGAKFSLLPAENATGNFTKIVQRIPVRIRLDLDD--QTNIVPGLSAVVKVDTRGAPKDTV 344

Query: 394 LVQYR 398
           +   R
Sbjct: 345 IASNR 349