Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (416), Expect = 2e-45
 Identities = 111/308 (36%), Positives = 174/308 (56%), Gaps = 23/308 (7%)

Query: 80  GIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMV 139
           G +   +V D ++V++G++L QL+D      + QAEA LA AK       A+ + L+A V
Sbjct: 3   GYVVLSDVTDNQHVRKGELLAQLEDNQFIAKVNQAEASLASAK-------ADLQTLAAKV 55

Query: 140 EAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLN 199
           E Q A   +  A + AA+AD  RA+  LSR + L  S   S +++   + GF  A A+L+
Sbjct: 56  ELQHALISQASAAVVAAKADNIRAEQQLSRAKKLKVSNYSSQDDVDQLQAGFDAAAAHLD 115

Query: 200 AAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAP 259
            AKA +  A+  +L+       NA L    +V    +  LA A      I L  T + AP
Sbjct: 116 EAKALLV-AKQRELAVF-----NAQLNQARSVVEQADATLALAN-----IQLNDTRVTAP 164

Query: 260 ISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGD 319
            SG++ KR   VG+ VQ G  L ++VP   +++ ANFKE +++ ++ GQ V ++ D +  
Sbjct: 165 FSGVIGKRGAMVGQYVQPGQALYSLVPDGAVWITANFKETQIQHMQPGQVVQVSLDAF-P 223

Query: 320 DVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELD-PKDLQAYPLQVGLS 378
           D T+ GV+   S  +G+ FS++PA+NATGN+ K+VQR+P+RI L+  +D +  P   GLS
Sbjct: 224 DKTFTGVIDSLSPASGAKFSLLPAENATGNFTKIVQRIPVRIRLELTEDARIVP---GLS 280

Query: 379 MVATIDTA 386
            V  +DT+
Sbjct: 281 AVVKVDTS 288