Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., multidrug transporter EmrA from Klebsiella michiganensis M5al

 Score =  173 bits (438), Expect = 8e-48
 Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 23/351 (6%)

Query: 38  AAAIVVAGGSYALY-WHFIGSRYIS--TDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVK 94
           AAAI + G    LY W        S  TDNAY   +   ++P V G I +V V D   VK
Sbjct: 25  AAAIGIVGVLVILYAWQLPPFTRESQFTDNAYVRGQTTFISPQVNGYITEVKVQDFNQVK 84

Query: 95  QGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLK 154
            GDVL Q+D+   +  + QA+A LA+ +  +++         A++   EA  Q  +AQ  
Sbjct: 85  AGDVLFQIDERIYKQRVHQAQATLAMKEAALKNNQQQRRSAEAVIARNEAALQNARAQNL 144

Query: 155 AAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLS 214
             QA       DL R ++L   GS+S  E  +A+   AQ  A++  AKA +  ++    S
Sbjct: 145 KTQA-------DLKRVQELTADGSLSIRERDSARASAAQGTADIEQAKATLEMSRQDLQS 197

Query: 215 TIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRR 274
           TI ++ +  A           +V  AKA  E A+IDL+ T I AP  G + +  V++G  
Sbjct: 198 TIVNRDSLLA-----------DVASAKAALELAQIDLQNTRIIAPTDGQLGQISVRLGAY 246

Query: 275 VQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGT 334
           V  G  L ++VP  H ++ AN KE +L  V+VGQ VT T D    +  + G V   S  T
Sbjct: 247 VTAGTHLTSLVPPQH-WLIANLKETQLAQVRVGQRVTFTVDALNSE-KFTGTVQSISPAT 304

Query: 335 GSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
           G  FS I   NATGN++K+ QR+P+RI +D        L+ G+S+  TIDT
Sbjct: 305 GVEFSAISPDNATGNFVKIAQRIPVRIAVDEGQKNGQRLRPGMSVQVTIDT 355