Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., multidrug resistance protein A, efflux pump from Caulobacter crescentus NA1000

 Score =  210 bits (535), Expect = 5e-59
 Identities = 139/370 (37%), Positives = 206/370 (55%), Gaps = 26/370 (7%)

Query: 36  GLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVKQ 95
           G+A A V+ GG+    W      + STDNA+  A+  +V+P V G +A+V V D + V+ 
Sbjct: 18  GVAIAAVLVGGTL---WFLDKQHFESTDNAFVQADTVQVSPQVSGYVAEVLVADNQRVEP 74

Query: 96  GDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLKA 155
           G VL ++D +  +  + QA A+ A A   VR+ + +   L   V AQ A      A + +
Sbjct: 75  GQVLAKIDPSTFQARVDQAIANAAAADAAVRA-IDDKNSLEQAVIAQRA------AGVTS 127

Query: 156 AQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLST 215
           AQAD  RAK DL R   L   G VS +++   +    Q+ A + +A+AA+ +A+     +
Sbjct: 128 AQADASRAKADLDRYNALADQGWVSQQKVQTTRAAATQSAAGVASAQAAL-EAEKRAAQS 186

Query: 216 IGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRRV 275
           +GS KA A            +   A A  EQAK+DLERTVIRAP+SG+V  R V+ G+ V
Sbjct: 187 LGSAKAQAIA----------QAAAAHAAVEQAKLDLERTVIRAPVSGVVGARAVRPGQLV 236

Query: 276 QVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGTG 335
           Q G+ LM+VVP    YV ANFKE ++  +++GQPV + AD +G +    G V  F+  TG
Sbjct: 237 QPGVALMSVVPLGQAYVVANFKETQVARLRIGQPVEIKADAFGKEKIV-GKVDSFAPATG 295

Query: 336 SAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGTTDPQTLV 395
             F++IP +NA GN+ K+ QRLP++I +D   L A  L+ GLS+   +D    + P    
Sbjct: 296 QEFALIPIENAVGNFTKITQRLPVKIAVDRSQLGA-ALRPGLSVEIKVDVRDRSGPSFA- 353

Query: 396 QYRAAKVSEQ 405
              AA+V+ Q
Sbjct: 354 --EAAQVTPQ 361