Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., membrane fusion protein (multidrug efflux system) from Paraburkholderia graminis OAS925

 Score =  293 bits (751), Expect = 5e-84
 Identities = 164/366 (44%), Positives = 229/366 (62%), Gaps = 30/366 (8%)

Query: 29  SRKKGFLG--LAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVN 86
           SRK+  L   L AA+VV+  +Y  Y+      + +TD+AY +  + ++TP V G +  VN
Sbjct: 44  SRKRQLLLTLLGAAVVVSVAAYGAYYMTYARYHETTDDAYVSGNLVQLTPQVTGTVVAVN 103

Query: 87  VVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANE 146
             DT+ VK GD +V LD+ DA +AL  AEA L    R+V S   N++  +A +  +    
Sbjct: 104 ADDTQIVKAGDPVVTLDNADATVALGNAEAMLGQTVRQVSSLYVNNDFYAANIAQK---- 159

Query: 147 QRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMA 206
                     Q+D  RA+ DL RR+ +  +G+VS E++ +A+     AQA L+AA+    
Sbjct: 160 ----------QSDLARAQDDLRRRQAVADTGAVSAEDIAHARDTVTAAQAALDAARQ--- 206

Query: 207 QAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAK 266
                        +AN ALTD+TT++ +P V  A ++   A +   R  + AP++G VAK
Sbjct: 207 -----------QAEANRALTDHTTIEQHPSVQAAASKVRDAYLAYARNTLPAPVTGYVAK 255

Query: 267 RQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGV 326
           R VQVG+RV  G PLM VVP + ++VDAN+KE +LR++++GQPVTLTAD+YG  V YHG 
Sbjct: 256 RSVQVGQRVSPGTPLMAVVPLNGVWVDANYKESQLRNMRIGQPVTLTADVYGSKVEYHGR 315

Query: 327 VAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTA 386
           V GFS GTGSAF+ +PAQNATGNWIKVVQRLP RIELD K+LQA+PL++GLSM   +DT 
Sbjct: 316 VVGFSAGTGSAFATLPAQNATGNWIKVVQRLPARIELDQKELQAHPLRIGLSMQVDVDTR 375

Query: 387 GTTDPQ 392
            +T  Q
Sbjct: 376 DSTGAQ 381