Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  193 bits (490), Expect = 8e-54
 Identities = 131/345 (37%), Positives = 196/345 (56%), Gaps = 24/345 (6%)

Query: 43  VAGGSYALYWHFIGSRYI-STDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVKQGDVLVQ 101
           VAGG Y  YW +   R+I +TDNAY  A+I+ V+  V G +   +V D ++V++G++L Q
Sbjct: 17  VAGGGY--YW-WTQVRFIETTDNAYVEADISHVSVKVPGYVVLSDVTDNQHVRKGELLAQ 73

Query: 102 LDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLKAAQADFE 161
           L+D      + QAEA LA AK       A+ + L+A VE Q A   +  A + AAQAD  
Sbjct: 74  LEDNQFSAKVSQAEALLASAK-------ADMQTLAAKVELQHALISQASAGVVAAQADKL 126

Query: 162 RAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLSTIGSQKA 221
           RA+  LSR + L  S   S +++   + GF  A A L+ AKA +  A+  +L+   +Q  
Sbjct: 127 RAEQQLSRAKKLKVSNYSSQDDVDQLQAGFDSAAAGLDEAKALLV-AKERELAVFNAQLN 185

Query: 222 NAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRRVQVGMPL 281
            A             V  + A  E AKI L  T + AP SG++ KR   VG+ VQ G  L
Sbjct: 186 QAGSV----------VEQSNAALELAKIQLNDTRVTAPFSGVIGKRGAMVGQYVQPGQAL 235

Query: 282 MTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGTGSAFSMI 341
            ++VP   +++ ANFKE +++ ++ GQ V ++ D +  D T+ GV+   S  +G+ FS++
Sbjct: 236 YSLVPDGAVWITANFKETQIQHMQPGQSVQVSLDAF-PDKTFTGVIDSLSPASGAKFSLL 294

Query: 342 PAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTA 386
           PA+NATGN+ K+VQR+P+RI LD    +A  +  GLS V  +DTA
Sbjct: 295 PAENATGNFTKIVQRIPVRIRLDLSAEEARVVP-GLSAVVKVDTA 338