Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., multidrug RND transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  270 bits (689), Expect = 1e-76
 Identities = 153/421 (36%), Positives = 234/421 (55%), Gaps = 6/421 (1%)

Query: 63  WPSANWWQRYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASA 122
           WP ++WW+   D QL+ LI EAL  SP +++A AR   A   A  A A R   L  +AS 
Sbjct: 56  WPKSDWWKSLGDPQLDGLIREALHDSPDMQIADARAHQASAAAYAADAARMPTLDASASV 115

Query: 123 TESKVSERYQSATPPDGWNDYGTLT---LNFQYDFDFWGKNRAAVVAATSELAAAEAESV 179
           + S+++   +   P     +Y T+     +F Y FD WG  RA   AA  +  AAE +  
Sbjct: 116 SRSRLA---RDKDPTGAGGNYATVRSIGASFNYTFDLWGGQRANWEAALGQARAAEVDQQ 172

Query: 180 AARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKA 239
           AA+L +S  +A AY+ L + +   +  +  L+   + ++L ++R ++G+++     Q ++
Sbjct: 173 AAQLTLSADVARAYSNLGQAHIVYDLANDDLKRTRQMLDLSKRRLSSGIDSQYQYQQTES 232

Query: 240 VAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLG 299
           + AS EA L+  ++++Q  K ALA L+G+GPDR   I  P +   S   LPS     LLG
Sbjct: 233 LEASSEATLIDAEKTLQSAKIALAVLLGKGPDRGNEIARPKVLQASAVALPSTLPAELLG 292

Query: 300 HRADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAI 359
            R D+ AARWR EAA++ +   + +FYP++ LSA  G ++   D LF S +    I P +
Sbjct: 293 RRPDLIAARWRVEAASKSIDAGKTKFYPNLNLSAAAGTESLLGDALFGSASRFFNIMPTV 352

Query: 360 YLPLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAV 419
            LP+F GGRL   L + +A Y  AVAQYN TLV+AL +V+D ++  + +  +I   + A 
Sbjct: 353 SLPIFDGGRLRANLDARDADYDLAVAQYNKTLVKALGDVSDTISQLRDIGRQIGAQQHAT 412

Query: 420 QQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGF 479
             A+ + +    RY  G+  YLDVL  E+ LL  QR L NL +    L + L+ ALGGGF
Sbjct: 413 DIAQDSYNTVVQRYGSGIGNYLDVLSIEQQLLQAQRQLANLNAEQIDLSIQLMQALGGGF 472

Query: 480 E 480
           +
Sbjct: 473 Q 473