Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., efflux transporter outer membrane subunit from Rahnella sp. WP5

 Score =  210 bits (535), Expect = 8e-59
 Identities = 133/471 (28%), Positives = 232/471 (49%), Gaps = 18/471 (3%)

Query: 22  LLSAFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQAEMDWPSANWWQRYQDAQLNHLI 81
           L +   L GC+  ++    +++ +  +L           +      WW+   D QL++L+
Sbjct: 12  LFAVLTLAGCASSNNIAPQSSLLDTQQLHLQQEKVSSLTI---GPQWWRSLNDPQLDNLM 68

Query: 82  EEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSER--------YQS 133
              LQ+SPSL  A AR++ AQ    +A A     L L  S    +V++         Y  
Sbjct: 69  TTTLQNSPSLRQAAARVREAQSVMGEADAANGPYLDLNGSTRRERVAKNTIPPFLTSYPE 128

Query: 134 ATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAY 193
           A   D  N  G   LN  Y+FD+WGK R  V AA +++ +A AE   A L +++S+A+AY
Sbjct: 129 APIYDSSNSLG---LNLSYEFDWWGKYRNQVNAAKAQVDSARAEQAEAALTLTSSVASAY 185

Query: 194 AELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQE 253
            +L    A Q+ +   +       +L + +Y  G+  +    Q +A A S + +++ ++ 
Sbjct: 186 YQLQANLALQDVLQHEVDNNQHLADLRKAQYQAGVYGVEIPQQTQAQADSAKQQIINLKA 245

Query: 254 SIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEA 313
             +  ++ L+AL G+GPD    +    +          E  + LLG R DI A R   E+
Sbjct: 246 QTEQLRHQLSALAGRGPDAMNGLHAVALPSPDALAPKGELTLDLLGKRPDIAAQRDLVES 305

Query: 314 AAQQVGIAQAQFYPDVTLSAFIGYQAFGL----DHLFDSGNDAGAIGPAIYLPLFTGGRL 369
            +Q+V  A+ +FYP +++SAF G           +LF++ + A  I PAI LP+F  G L
Sbjct: 306 YSQRVSAAKKEFYPSLSISAFGGLTTTNYGGTSPNLFEAASKAWNIAPAISLPIFHAGAL 365

Query: 370 EGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIA 429
             +L    A Y ++V  YN T++ A+ + AD +T S++   ++ +   A +  E+   ++
Sbjct: 366 RSKLGEESALYDQSVESYNQTILNAIQQTADAITVSKSSVEQLQQASSAAKSLEEVYRVS 425

Query: 430 TNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480
             RY  G+    ++L ++ +LL  Q+A +   S+     ++LI ALGGG++
Sbjct: 426 DARYNAGVIGRDELLTSQSALLQQQQAQLTASSQLMQAKISLIRALGGGYQ 476