Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  354 bits (909), Expect = e-102
 Identities = 184/382 (48%), Positives = 254/382 (66%), Gaps = 1/382 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL + L++ +  LGYQ PT +Q QA+P +L GRDL+AAAQTGTGKTA F +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           + L  +G       VRALILVPTRELA QV E V QY ++  L + AV+GGV    Q  +
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVD+LVATPGRL+DL+ Q A+ F +++ +VLDEADRMLD+GF E +  I   LP + 
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S  +R LA   + DP  I ++    + + + QW++TVDK  K  L  HL+ 
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMR 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           + +W Q L+F +T++G   LV +L+  G++A+  H  + QA R + L+ FK+G+++ LVA
Sbjct: 241 KHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQILVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DI+ L  VVN+DLP  A++Y+HRIGRTGRA A G+AIS V  D    L  IE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVP 381
                 + R++ + FEP+  VP
Sbjct: 361 MLTRQTLPRQMEQDFEPEHRVP 382