Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  337 bits (863), Expect = 7e-97
 Identities = 182/381 (47%), Positives = 240/381 (62%), Gaps = 6/381 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF+ LGLS+ LV  +   GY +PT +Q +AIP +LQGRDL+ AAQTGTGKT  F LPIL
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  EKL------RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQ 114
           E+L       + Q    ++ R L+L PTRELA QV E  + Y +D    S  +FGGV   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 115 AQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDC 174
            Q Q +  GVDVLVA PGRL+DL GQ +V    +E++VLDEADRMLDMGF+  + K++  
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALL 234
           LP++ Q LLFSAT S+ + +LA   + +P  I +     +   I Q +  +    K ALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 235 SHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
           +HLI    W+Q L+F  TKHGA +L   L+K G+ A A H  +SQ  R + L DFK+G++
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 295 KYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
           + LVAT +AARG+DIDQL  VVN++LP   ++YVHRIGRTGRA   GEAIS V+ D  K 
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LCMIESRLGHLIERRVVEGFE 375
           L  IE      I    + GF+
Sbjct: 361 LKSIERMTKQKIADGDLMGFD 381