Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  377 bits (967), Expect = e-109
 Identities = 191/386 (49%), Positives = 265/386 (68%), Gaps = 1/386 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL D L++T+  L Y+KPT +Q +AIP +L+GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           ++L  +G       VRAL+LVPTRELA QV E    YG++  L++ AV+GGV    Q   
Sbjct: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  G+DVLVATPGRL+DLY Q AV F +++ +VLDEADRMLD+GF + ++++   LP + 
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S  +R++A+  +RDP  + ++   A+   + QWL+ VDK  KS L  HL+ 
Sbjct: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           E++W Q L+F++T+ G  +LV +L+  GI ++A H  + QA R + LE FK+G+++ LVA
Sbjct: 241 EKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DI  L +VVN+DLP  A++YVHRIGRTGRA A GEA+S VS D    L  IE
Sbjct: 301 TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVPISIL 385
           + +  ++ R    GF P   VP + L
Sbjct: 361 TLINQVLPRHDELGFVPDHRVPTTTL 386