Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  339 bits (870), Expect = 1e-97
 Identities = 184/379 (48%), Positives = 242/379 (63%), Gaps = 10/379 (2%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF+ LGLS+ L   V   GY +PT +Q +AIP +LQGRDL+ AAQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  EKLRQGQTQRK------KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQ 114
           E L  G    +      K+ R L+L PTRELA QV E  + Y +D  LKS  +FGGV   
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 115 AQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDC 174
            Q Q +  G+DVLVA PGRL+DL  Q+A+    +E++VLDEADRMLDMGFI  + K++  
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALL 234
           LP++ Q LLFSAT S+ + +LA   + +P  I +     +   I Q +  V    K ALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 235 SHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
           +HLI +  W+Q L+F  TKHGA +L   LEK G+ A A H  +SQ  R + L DFK+ ++
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 295 KYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
           + LVAT +AARG+DIDQL  VVN++LP   ++YVHRIGRTGRA   GEAIS V+ D  K 
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LCMIESRLGHLIERRVVEG 373
           L  IE     + ++R+ EG
Sbjct: 361 LKGIE----RMTKQRIPEG 375