Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  269 bits (687), Expect = 2e-76
 Identities = 147/358 (41%), Positives = 216/358 (60%), Gaps = 5/358 (1%)

Query: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
           F+ LG+   ++  ++ +GY++P+ IQ+QAIPVIL G D+I  AQTGTGKTA+F LPIL K
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDT-GLKSLAVFGGVDEQAQKQRLI 121
           +       +K V+ALIL PTRELA+QVA   E Y K   GL  +AV+GG     Q + + 
Sbjct: 68  IDPA----RKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIR 123

Query: 122 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
            G  V+VATPGRL+D   + +     I  +VLDEAD ML +GF++ +  I + +P   Q 
Sbjct: 124 QGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQT 183

Query: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQ 241
           +LFSATL   +R +A+  +R+P  I IAA   + + I Q  + V  D K   +  L+  +
Sbjct: 184 VLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVE 243

Query: 242 QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATG 301
            +D  + F+ TK     L + LE +G  A A +   +Q  R +++E  K G++  +VAT 
Sbjct: 244 DFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATD 303

Query: 302 VAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           VAARG+D+ +++ V N D+P+  + YVHRIGRTGRA   G A+  V+    + L +IE
Sbjct: 304 VAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361