Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  264 bits (675), Expect = 3e-75
 Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 3/375 (0%)

Query: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
           F Q  L + L++ VA+L + +PT +Q  AIP  L+GRDL   AQTG+GKTA+FVLP+L +
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 63  LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
           L  G    +  VRALIL+PTRELA Q  ++VE++ + T +KS  + GG D + Q   L  
Sbjct: 62  LI-GDAVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVLRK 120

Query: 123 GVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFL 182
             D+L+ TPGR+++      +  +++EM++LDEADRMLDMGF E + +++       Q L
Sbjct: 121 VPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQTL 180

Query: 183 LFSATLSRK-VRELAKTAVRDPHEISIAANQASKSNISQWLITV-DKDTKSALLSHLINE 240
           LFSAT     +RE+  + +RDP  + +           Q +IT  D   K  L+  L+  
Sbjct: 181 LFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLLAN 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           + + +A+IF  T+  A +L  +L   G+ A   H  + Q  R   ++  K G +K LVAT
Sbjct: 241 ETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            VAARG+DI+ L  V+N+D+P   DEYVHRIGRTGRA A G AIS +  +++  +  IE 
Sbjct: 301 DVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIER 360

Query: 361 RLGHLIERRVVEGFE 375
            L    E RVV+G +
Sbjct: 361 YLKQRFEHRVVKGLK 375