Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., ATP-dependent RNA helicase RhlE from Xanthomonas campestris pv. campestris strain 8004

 Score =  276 bits (706), Expect = 8e-79
 Identities = 159/373 (42%), Positives = 216/373 (57%), Gaps = 2/373 (0%)

Query: 6   LGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQ 65
           L L  V    +A+ G +  T IQ   IP +L  RDLIA AQTG+GKT ++ LP+L++  Q
Sbjct: 10  LQLQPVFESALARAGVRALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ 69

Query: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGK--DTGLKSLAVFGGVDEQAQKQRLIDG 123
              Q  + +  LILVPTREL  QVA  +          LK +A  GG     Q   L  G
Sbjct: 70  APEQAPRVLGGLILVPTRELVAQVAHTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 124 VDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLL 183
            D+++ATPGRL+DL    A+   ++  +VLDEADR+LD+GF   +++I+  LP++ Q +L
Sbjct: 130 ADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVL 189

Query: 184 FSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQW 243
            SAT    +  LAK  +RDP  I++         I+Q  I VD   ++ LL HL+ E  W
Sbjct: 190 VSATFPAAIASLAKRRLRDPLRITLGGTPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHGW 249

Query: 244 DQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVA 303
            Q L+F+ ++HGA K+  +L K GI A   H   SQ  R + L  FK   ++ LVAT +A
Sbjct: 250 PQLLVFVTSRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309

Query: 304 ARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLG 363
            RGIDID L  V+NYDLP    +Y HRIGRT RA A G AISFV+ D+ +   +IE R G
Sbjct: 310 GRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQWRLIEKRQG 369

Query: 364 HLIERRVVEGFEP 376
             +   V+EGFEP
Sbjct: 370 LRVPTSVIEGFEP 382