Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

 Score =  273 bits (697), Expect = 1e-77
 Identities = 147/347 (42%), Positives = 217/347 (62%), Gaps = 5/347 (1%)

Query: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
           F+ LGLSD +++ VA +GY+ P+ IQ   IP +L GRD++  AQTGTGKTA+F LP+L  
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDT-GLKSLAVFGGVDEQAQKQRLI 121
               Q     + +AL+L PTRELA+QVAE  ++Y +   G + L V+GG     Q   L 
Sbjct: 71  ADLNQV----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALK 126

Query: 122 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
            GV V+V TPGR++D   +  +   +++ +VLDEAD ML MGFI+ +  ++  LP + Q 
Sbjct: 127 RGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQV 186

Query: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQ 241
            LFSAT+   +R +A+T ++DP E++IAA   + +NI Q    V    K   L+ ++  +
Sbjct: 187 ALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVE 246

Query: 242 QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATG 301
            +D  +IF  TK    +L  +L+ RG+ A A +    QA R + +   K GK+  LVAT 
Sbjct: 247 PFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATD 306

Query: 302 VAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVS 348
           VAARG+D++++S V+NYD+P+  + YVHRIGRTGRA   G+AI FV+
Sbjct: 307 VAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVT 353