Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  358 bits (919), Expect = e-103
 Identities = 187/382 (48%), Positives = 254/382 (66%), Gaps = 1/382 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL + L++ +  LGYQ PT +QTQAIP +L GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           ++L  +G       +RAL+L PTRELA QV E + QY +   L + A +GGV    Q  +
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVDVLVATPGRL+DL+ Q AV F +++ ++LDEADRMLD+GF E +  I   LP + 
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S ++R LA   + DP  I ++    + S++ QW++TVDK  K+ L  HL+ 
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMK 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           + +W Q L+F +T+ G  +LV +L+  G++A+  H  + QA R + L+ FKS ++K LVA
Sbjct: 241 KHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DID L  VVN DLP  A++Y+HRIGRTGRA   GEAIS V  D  + L  IE
Sbjct: 301 TDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVP 381
                 +ER+  + FEP+  VP
Sbjct: 361 VLTRQTLERKEEQDFEPEHRVP 382