Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  292 bits (747), Expect = 2e-83
 Identities = 167/377 (44%), Positives = 234/377 (62%), Gaps = 4/377 (1%)

Query: 2   SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
           +F +LGLS+ +V T++  G++KPT IQ QAIP++L+  DLI  AQTGTGKTA+F LP++E
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  KL-RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           KL   G+    + +RAL+L PTREL  Q+A  ++ + K + LK   V GGV    Q ++L
Sbjct: 63  KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVD+LVATPGRL+DL  ++AV   +   +VLDEAD+MLD+GFI  + KI   +P   Q
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV-DKDTKSALLSHLIN 239
            LLFSAT+ + + ELA   + DP ++ ++    +   + Q++  V  KD K+ +L   + 
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLT 242

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
                 +LIF  TKHGA KL+  L+  G  A + H  +SQ  R + L+ F+ G+I+ LVA
Sbjct: 243 ANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVA 302

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARGIDI  ++ V NYDLP   D YVHRIGRT R    G AI+F + D  + L  IE
Sbjct: 303 TDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362

Query: 360 SRLGHLIERRVVEGFEP 376
             +G  I+  V  G  P
Sbjct: 363 KLMG--IQIAVASGEAP 377