Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  371 bits (952), Expect = e-107
 Identities = 197/383 (51%), Positives = 256/383 (66%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF+ LGLS  +++ +   GY+ P+ IQ QAIPV+L+GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           E L Q Q    K+VRALIL PTRELA Q+A+ +  Y K   LKS  VFGGV    Q   L
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             G+D+LVATPGRL+DL+ Q AV F  +E++VLDEADRMLDMGFI  I +I+  LP++ Q
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSAT S ++R LA   + +  E+S+    ++  ++ QW++ VDK+ K ALL+ L   
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRF 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
            +W Q L+F  TKHGA +LV Q++  GI A A H  +SQ  R Q L DFK G I+ L+AT
Sbjct: 241 YRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            +AARGIDI +L  VVN++LP   ++YVHRIGRTGRA A GEA S V  +  K L  IE 
Sbjct: 301 DIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDIER 360

Query: 361 RLGHLIERRVVEGFEPKKPVPIS 383
            +   + R+   GFEP   +P S
Sbjct: 361 LIKQSLPRKEFVGFEPVHGLPPS 383