Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  298 bits (763), Expect = 2e-85
 Identities = 164/376 (43%), Positives = 230/376 (61%), Gaps = 1/376 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M F     +  ++Q +A+ GY+  T IQ  AIP + +G+D++A+AQTGTGKTA+F LPIL
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  EKLRQGQTQRKK-RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           +KL      R+  + RALIL PTREL  Q+A  ++ Y K   L    VFGG     Q Q+
Sbjct: 61  QKLLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQK 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  G D++VATPGRL++      +    +E +VLDEADRMLDMGFI  I K+I     E 
Sbjct: 121 LRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKER 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q L+FSAT S  VR+LA   ++    ++   +  + + +SQ +  V++  K  LLS LI 
Sbjct: 181 QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELIG 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
            + W + L+F  T+    KL  +L   GI +   HS ++Q  R + L+DF  GKI+ LV+
Sbjct: 241 RKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVS 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DI  L  VVN+DLPF  ++YVHR+GRTGRA   G AISFVS++  + L  IE
Sbjct: 301 TEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 360 SRLGHLIERRVVEGFE 375
             +G  ++R V+ G+E
Sbjct: 361 KLIGQRLKRIVMPGYE 376