Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score =  556 bits (1434), Expect = e-163
 Identities = 280/396 (70%), Positives = 333/396 (84%), Gaps = 2/396 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF++LGL+  +   +  L YQ+PT IQ +AIPV L GR+L+AAAQTGTGKTA+F LP++
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           E+L QG+T+RKKRVRA+IL PTREL +QVA+ +  Y  +  L  LA++GGVD QAQKQ L
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
           I GVD+LVATPGRL D+Y QRAVYFEEI+++VLDEADRMLDMGFIE IN +I  +P+  Q
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSATLS ++RELAKTAV DP EI+IA  + SK  ISQWL+TVDKDTKSALLSHLI  
Sbjct: 181 NLLFSATLSPRIRELAKTAVPDPVEIAIA--KPSKKEISQWLVTVDKDTKSALLSHLIQT 238

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           +QW QALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQA+R Q+L +FK G ++YLVAT
Sbjct: 239 EQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVAT 298

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
           GVAARGID+D+L RVVNYDLPFP DEY+HRIGRTGRA   GEA+S +SKD+FKNLCMIES
Sbjct: 299 GVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCMIES 358

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVPKHKRAVQ 396
           RLGH+IERRV+EGFEPKKP+P+SIL+Y PK +   Q
Sbjct: 359 RLGHVIERRVIEGFEPKKPIPVSILDYKPKSQPKAQ 394