Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., DEAD/DEAH box helicase from Rhodopseudomonas palustris CGA009

 Score =  273 bits (697), Expect = 1e-77
 Identities = 155/374 (41%), Positives = 219/374 (58%), Gaps = 4/374 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSFS LGLS+ +   VA  GY  PT IQ QAIP +L  +D++  AQTGTGKTA+FVLP+L
Sbjct: 1   MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
             L +G+  R +  R LIL PTRELA QV E+ ++YG    L    + GGV    Q  +L
Sbjct: 61  TMLEKGRA-RARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKL 119

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVDVL+ATPGRL+D   +  +    +EM+++DEADRMLDMGFI  I +I   +P   Q
Sbjct: 120 TRGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQ 179

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD--TKSALLSHLI 238
            L F+AT+  ++R + +T + +P +I ++   ++   ++Q  +   ++   K   L  LI
Sbjct: 180 TLFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLI 239

Query: 239 -NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
                   A+IF   K   A L   L++ G    A H    Q  R   LE F+ G +  L
Sbjct: 240 RGATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPIL 299

Query: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
           VA+ VAARG+DI ++S V N+D+P   D+YVHRIGRTGRA   G A++ V+  + K++  
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMAA 359

Query: 358 IESRLGHLIERRVV 371
           +E  +G  I R  V
Sbjct: 360 VEKLIGQAISRAEV 373