Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  264 bits (675), Expect = 4e-75
 Identities = 155/404 (38%), Positives = 229/404 (56%), Gaps = 19/404 (4%)

Query: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
           FS L L+  +++ + + GY+ PT IQ  AIP  L+GRD++  AQTGTGKTASF LP++  
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
           L +G+  R +  R+L+L PTRELA QVAE  + Y K   L    + GGV  + Q   +  
Sbjct: 64  LARGRA-RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDK 122

Query: 123 GVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFL 182
           GVDVL+ATPGRL+D + +  +   +++++V+DEADRMLDMGFI  I +I    P   Q L
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 183 LFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV-------DKDTKSALLS 235
            FSAT++ ++  +  T +  P  + +A    +  NI+Q ++         +   K  LL 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLR 242

Query: 236 HLINE--QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGK 293
           HLI++  ++   A+IF   K     +   L+K G  A   H    Q+ R + LE F+ G 
Sbjct: 243 HLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGS 302

Query: 294 IKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
           +++LVA+ VAARG+D+  +S V N+D+P  A++YVHRIGRTGRA   G A+      + K
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEK 362

Query: 354 NLCMIESRLGHLIERRVVEGFEPKKPVPISILNYVPKHKRAVQD 397
           NL  IE         R+V+   P+   P+      PK K +  D
Sbjct: 363 NLEDIE---------RLVQNEIPRIENPLKKAKAEPKAKDSKDD 397