Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  297 bits (761), Expect = 4e-85
 Identities = 165/381 (43%), Positives = 235/381 (61%), Gaps = 2/381 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F  L L  +L Q     GY+  T +Q + IP  L GRDL+A AQTGTGKTA+F   +L
Sbjct: 1   MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           ++L   Q +   ++ ALIL PTRELA+QVA+ + +Y + T L +LAV+GG +   Q++ L
Sbjct: 61  QRLLN-QPRAIGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVD+LVATPGRL DL GQ  +  E ++ +++DEADRMLDMGF+  I +    L     
Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            +LFSAT + +V+ LA   + +P  I++ +  +S   I Q +  +D   K+ LL+ LI  
Sbjct: 180 TMLFSATFTPEVKALATKMLDNPEWINVTS-ASSGPQIEQKIYPLDARRKAELLAELIGR 238

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
             W Q L+F+ TK  A +L  +L+  GI    FH  ++Q  R + LE FK+G+++ LVAT
Sbjct: 239 NNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVAT 298

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            VAARG+DI  L  V+N +LP    +YVHRIGRTGRA   G +ISFV+K +   L  IE+
Sbjct: 299 DVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGAIEA 358

Query: 361 RLGHLIERRVVEGFEPKKPVP 381
            +G  + R V  G+E   P+P
Sbjct: 359 LIGKTLPREVQPGYEMGAPLP 379