Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  547 bits (1410), Expect = e-160
 Identities = 275/393 (69%), Positives = 327/393 (83%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL + ++  + QLGY +PT IQ +AIP+ L+G++LIAAAQTG+GKTA+FVLP+L
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
             L QGQTQRKKR RA+IL PTREL +QV +++ +YGK  GL S+AV+GGVD QAQKQ+L
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
           I+GVD++VATPGRL DLY QRA+ F+E+E++VLDEADRMLDMGFIE I KI+D LP E Q
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSATLSR VRELAK AV     +S+  NQ S+ +I QW+ TVDKD KSALLS LI +
Sbjct: 181 NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIKD 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
             W QALIFIETKHGAAKLVSQLEKRGI AE  HSGR+QA+R Q+L DFK+GKI YL++T
Sbjct: 241 NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLIST 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
           G++ARGIDID L  V+NYDLPFPADEYVHRIGRTGRA A GEAIS VSKD+FKNLCMIES
Sbjct: 301 GISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIES 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVPKHKR 393
           RL HL+ERR +EGF P+KPVPISILNYVPK KR
Sbjct: 361 RLDHLLERREIEGFAPRKPVPISILNYVPKAKR 393